邓晔-中国科学院大学-UCAS
[中文]
[English]
招生信息
教育背景
工作经历
教授课程
专利与奖励
出版信息
科研活动
合作情况
指导学生
基本信息
邓晔 男 博导 中国科学院生态环境研究中心电子邮件： yedeng@rcees.ac.cn通信地址： 北京市海淀区双清路18号邮政编码： 100085
招生信息
招生专业
071300-生态学071005-微生物学071021-生物信息学
招生方向
微生物生态学环境微生物技术生物统计学
教育背景
2007-08--2009-07 美国俄克拉荷马大学 博士后2002-08--2007-06 浙江大学 博士1998-09--2002-06 中南大学 学士
工作经历
工作简历
2009-09~2014-01,美国俄克拉荷马大学, 研究科学家
社会兼职
2017-01-01-今,BMC Microbiology杂志, 编辑2016-01-01-今,国际微生物生态学会, 中国青年大使2016-01-01-今,Frontiers in Microbiology杂志, 编辑2014-08-01-今,中国生态学会微生物生态专业委员会, 委员
教授课程
现代环境生物技术分子生物学在环境生物技术中的应用
专利与奖励
专利成果
[1] 金德才, 吴璐瑶, 邓晔. 一种利用观赏植物修复铬污染土壤的方法. CN: CN114011875A, 2022-02-08.[2] 邓晔, 杜雄峰, 厉舒祯. 一种用于评估土壤微生物多样性的方法. CN: CN111455032A, 2020-07-28.[3] 邓晔, 吴悦妮. 一种基于k-mer算法的引物设计方法及系统. CN: CN111326210A, 2020-06-23.[4] 邓晔, 刘洋荧, 厉舒祯. 一种利用碳基纳米材料提升真菌群落检测准确性的方法. CN: CN108517369A, 2018-09-11.[5] 邓晔, 魏子艳. 一种构建抗生素抗性基因数据库的方法. CN: CN108491692A, 2018-09-04.[6] 邓晔, 厉舒帧, 宋茂勇. 一种利用碳基纳米材料提升细菌群落多样性检测准确性的方法. CN: CN108060219A, 2018-05-22.
出版信息
发表论文
[1] 彭玺, 冯凯, 厉舒祯, 邓晔. 宏基因组学技术与微生物群落多样性分析方法. 科技导报[J]. 2022, 40(3): 99-111, http://lib.cqvip.com/Qikan/Article/Detail?id=7106895727.[2] Yang, Xingsheng, Zhang, Zhaojing, Li, Shuzhen, He, Qing, Peng, Xi, Du, Xiongfeng, Feng, Kai, Wang, Shang, Deng, Ye. Fungal dynamics and potential functions during anaerobic digestion of food waste. ENVIRONMENTAL RESEARCH[J]. 2022, 212: http://dx.doi.org/10.1016/j.envres.2022.113298.[3] Li, Shuzhen, Deng, Ye, Lian, Shengyang, Dai, Chunxiao, Ma, Qiao, Qu, Yuanyuan. Succession of diversity, functions, and interactions of the fungal community in activated sludge under aromatic hydrocarbon stress. ENVIRONMENTAL RESEARCH[J]. 2022, 204: http://dx.doi.org/10.1016/j.envres.2021.112143.[4] Tian, Dashuan, Xiang, Yangzhou, Seabloom, Eric, Chen, Han Y H, Wang, Jinsong, Yu, Guirui, Deng, Ye, Li, Zhaolei, Niu, Shuli. Ecosystem restoration and belowground multifunctionality: A network view. ECOLOGICAL APPLICATIONS[J]. 2022, 32(5): http://dx.doi.org/10.1002/eap.2575.[5] Wu, Shanghua, Dong, Yuzhu, Deng, Ye, Cui, Lijuan, Zhuang, Xuliang. Protistan consumers and phototrophs are more sensitive than bacteria and fungi to pyrene exposure in soil. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2022, 822: http://dx.doi.org/10.1016/j.scitotenv.2022.153539.[6] 马坤, 芦光新, 邓晔, 颜珲璘, 王英成, 赵阳安, 张海娟, 周学丽, 窦声云. 有机肥对垂穗披碱草根际微生物及土壤理化性质的影响. 草地学报[J]. 2022, 30(3): 594-602, http://lib.cqvip.com/Qikan/Article/Detail?id=7106816476.[7] Kang, Luyao, Chen, Leiyi, Zhang, Dianye, Peng, Yunfeng, Song, Yutong, Kou, Dan, Deng, Ye, Yang, Yuanhe. Stochastic processes regulate belowground community assembly in alpine grasslands on the Tibetan Plateau. ENVIRONMENTAL MICROBIOLOGY[J]. 2022, 24(1): 179-194, http://dx.doi.org/10.1111/1462-2920.15827.[8] 赵阳安, 芦光新, 邓晔, 王英成, 马坤, 颜珲璘, 张海娟, 周学丽, 窦声云. 根瘤菌拌种对两种苜蓿生长及根际微生物多样性的影响. 草地学报[J]. 2022, 30(2): 370-378, http://lib.cqvip.com/Qikan/Article/Detail?id=7106678937.[9] 晏彩霞, 王琨, 张波, 肖丽英, 厉舒桢, 邓晔, 李燕. 口腔扁平苔藓患者唾液细菌组和真菌组结构解析. 四川大学学报:医学版[J]. 2022, 53(2): 274-280, http://lib.cqvip.com/Qikan/Article/Detail?id=7106908177.[10] Rueger, Lioba, Feng, Kai, Dumack, Kenneth, Freudenthal, Jule, Chen, Yan, Sun, Ruibo, Wilson, Monica, Yu, Peng, Sun, Bo, Deng, Ye, Hochholdinger, Frank, Vetterlein, Doris, Bonkowski, Michael. Assembly Patterns of the Rhizosphere Microbiome Along the Longitudinal Root Axis of Maize (Zea mays L.). FRONTIERS IN MICROBIOLOGY[J]. 2021, 12: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7906986/.[11] Wang, Pei, Kong, Xiao, Chen, Hongsong, Xiao, Youlun, Liu, Huijun, Li, Xiaojuan, Zhang, Zhuo, Tan, Xinqiu, Wang, Diandong, Jin, Decai, Deng, Ye, Cernava, Tomislav. Exploration of Intrinsic Microbial Community Modulators in the Rice Endosphere Indicates a Key Role of Distinct Bacterial Taxa Across Different Cultivars. FRONTIERS IN MICROBIOLOGY[J]. 2021, 12: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7920960/.[12] Ye Deng. Warming-driven migration of core microbiota projects soil property changes at continental scale. Science Bulletin. 2021, [13] 姚世庭, 芦光新, 邓晔, 范月君, 周华坤, 党宁, 王英成, 张海娟, 颜珲璘. 模拟增温对高寒草地土壤原核生物群落组成及多样性影响. 草地学报[J]. 2021, 29(S01): 27-34, http://lib.cqvip.com/Qikan/Article/Detail?id=7105981621.[14] Zhou, Yuqi, Sun, Baoyu, Xie, Baohua, Feng, Kai, Zhang, Zhaojing, Zhang, Zheng, Li, Shuzhen, Du, Xiongfeng, Zhang, Qi, Gu, Songsong, Song, Wen, Wang, Linlin, Xia, Jianyang, Han, Guangxuan, Deng, Ye. Warming reshaped the microbial hierarchical interactions. GLOBAL CHANGE BIOLOGY[J]. 2021, 27(24): 6331-6347, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000700272200001.[15] Wei, Ziyan, Feng, Kai, Wang, Zhujun, Zhang, Yu, Yang, Min, Zhu, YongGuan, Virta, Marko P J, Deng, Ye. High-Throughput Single-Cell Technology Reveals the Contribution of Horizontal Gene Transfer to Typical Antibiotic Resistance Gene Dissemination in Wastewater Treatment Plants. ENVIRONMENTAL SCIENCE & TECHNOLOGY[J]. 2021, 55(17): 11824-11834, http://dx.doi.org/10.1021/acs.est.1c01250.[16] Wang, Shang, Bao, Xuelian, Feng, Kai, Deng, Ye, Zhou, Wenjun, Shao, Pengshuai, Zheng, Tiantian, Yao, Fei, Yang, Shan, Liu, Shengen, Shi, Rongjiu, Bai, Zhen, Xie, Hongtu, Yu, Jinghua, Zhang, Ying, Zhang, Yiping, Sha, Liqing, Song, Qinghai, Liu, Yuntong, Zhou, Jizhong, Zhang, Yuguang, Li, Hui, Wang, Qingkui, Han, Xingguo, Zhu, Yongguan, Liang, Chao. Warming-driven migration of core microbiota indicates soil property changes at continental scale. SCIENCE BULLETIN[J]. 2021, 66(19): 2025-2035, http://dx.doi.org/10.1016/j.scib.2021.01.021.[17] Li, Enze, Deng, Tongchu, Yan, Lei, Zhou, Jizhong, He, Zhili, Deng, Ye, Xu, Meiying. Elevated nitrate simplifies microbial community compositions and interactions in sulfide-rich river sediments. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2021, 750: http://dx.doi.org/10.1016/j.scitotenv.2020.141513.[18] 杨兴盛, 王尚, 何晴, 王朱珺, 张照婧, 姜成英, 马黎萍, 刘贤伟, 胡宝兰, 李咏梅, 邓晔. 典型有机固废厌氧消化微生物研究现状与发展方向. 生物工程学报[J]. 2021, 37(10): 3425-3438, http://lib.cqvip.com/Qikan/Article/Detail?id=7105822245.[19] 周煜琦, 张照婧, 位光山, 张政, 邓晔. 全球变化下海岸带微生物生态研究进展. 微生物学报[J]. 2021, 61(6): 1743-1760, http://lib.cqvip.com/Qikan/Article/Detail?id=7105041738.[20] 姚世庭, 芦光新, 邓晔, 党宁, 王英成, 张海娟, 颜珲璘. 模拟增温对土壤真菌群落组成及多样性的影响. 生态环境学报[J]. 2021, 30(7): 1404-1411, http://lib.cqvip.com/Qikan/Article/Detail?id=7105682923.[21] 王英成, 芦光新, 赵丽蓉, 邓晔, 王军邦. 高寒草甸退化对土壤电导率变化影响的研究. 干旱区研究[J]. 2021, 38(1): 104-113, http://lib.cqvip.com/Qikan/Article/Detail?id=7103949146.[22] 邓晔. 土壤中塑料与微生物的相互作用及其生态效应. 中国环境科学. 2021, [23] Yu, Hao, Deng, Ye, He, Zhili, Pendall, Elise, Carrillo, Yolima, Wang, Shang, Jin, Decai, Wu, Liyou, Wang, Aijie, Xu, Ying, Liu, Baoyong, Tai, Xin, Zhou, Jizhong. Stimulation of soil microbial functioning by elevated CO2 may surpass effects mediated by irrigation in a semiarid grassland. GEODERMA[J]. 2021, 401: http://dx.doi.org/10.1016/j.geoderma.2021.115162.[24] Li, Hui, Yang, Shan, Semenov, Mikhail V, Yao, Fei, Ye, Ji, Bu, Rencang, Ma, Ruiao, Lin, Junjie, Kurganova, Irina, Wang, Xugao, Deng, Ye, Kravchenko, Irina, Jiang, Yong, Kuzyakov, Yakov. Temperature sensitivity of SOM decomposition is linked with a K-selected microbial community. GLOBAL CHANGE BIOLOGY[J]. 2021, 27(12): 2763-2779, http://dx.doi.org/10.1111/gcb.15593.[25] Li, Shuzhen, Deng, Ye, Du, Xiongfeng, Feng, Kai, Wu, Yueni, He, Qing, Wang, Zhujun, Liu, Yangying, Wang, Danrui, Peng, Xi, Zhang, Zhaojing, Escalas, Arthur, Qu, Yuanyuan. Sampling cores and sequencing depths affected the measurement of microbial diversity in soil quadrats. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2021, 767: http://dx.doi.org/10.1016/j.scitotenv.2021.144966.[26] Dong, Yuzhu, Wu, Shanghua, Deng, Ye, Wang, Shijie, Fan, Haonan, Li, Xianglong, Bai, Zhihui, Zhuang, Xuliang. Distinct Functions and Assembly Mechanisms of Soil Abundant and Rare Bacterial Taxa Under Increasing Pyrene Stresses. FRONTIERS IN MICROBIOLOGY[J]. 2021, 12: http://dx.doi.org/10.3389/fmicb.2021.689762.[27] Wang, Shang, Hou, Weiguo, Jiang, Hongchen, Dong, Hailiang, Huang, Liuqin, Chen, Shu, Wang, Bin, Chen, Yongcan, Lin, Binliang, Deng, Ye. The Lifestyle-Dependent Microbial Interactions Vary Between Upstream and Downstream of the Three Gorges Dam. FRONTIERS IN ECOLOGY AND EVOLUTION[J]. 2021, 9: https://doaj.org/article/4d26c9fc849446c4833aad73e1aaf1f3.[28] Tan, Lin, Zeng, WeiAi, Xiao, Yansong, Li, Pengfei, Gu, Songsong, Wu, Shaolong, Zhai, Zhengguang, Feng, Kai, Deng, Ye, Hu, Qiulong. Fungi-Bacteria Associations in Wilt Diseased Rhizosphere and Endosphere by Interdomain Ecological Network Analysis. FRONTIERS IN MICROBIOLOGY[J]. 2021, 12: http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000698660200001.[29] He, Qing, Wang, Shang, Hou, Weiguo, Feng, Kai, Li, Fangru, Hai, Wanming, Zhang, Yidi, Sun, Yuxuan, Deng, Ye. Temperature and microbial interactions drive the deterministic assembly processes in sediments of hot springs. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2021, 772: http://dx.doi.org/10.1016/j.scitotenv.2021.145465.[30] Wang, Shang, Hou, Weiguo, Jiang, Hongchen, Huang, Liuqin, Dong, Hailiang, Chen, Shu, Wang, Bin, Chen, Yongcan, Lin, Binliang, Deng, Ye. Microbial diversity accumulates in a downstream direction in the Three Gorges Reservoir. JOURNAL OF ENVIRONMENTAL SCIENCES[J]. 2021, 101(3): 156-167, http://lib.cqvip.com/Qikan/Article/Detail?id=7103979051.[31] Wang, Yingcheng, Lu, Guangxin, Yu, Hao, Du, Xiongfeng, He, Qing, Yao, Shiting, Zhao, Lirong, Huang, Caixia, Wen, Xiaocheng, Deng, Ye. Meadow degradation increases spatial turnover rates of the fungal community through both niche selection and dispersal limitation. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2021, 798: http://dx.doi.org/10.1016/j.scitotenv.2021.149362.[32] Du, Xiongfeng, Deng, Ye, Li, Shuzhen, Escalas, Arthur, Feng, Kai, He, Qing, Wang, Zhujun, Wu, Yueni, Wang, Danrui, Peng, Xi, Wang, Shang. Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process. MOLECULAR ECOLOGY[J]. 2021, 30(4): 1072-1085, http://dx.doi.org/10.1111/mec.15777.[33] 王丹蕊, 沈文丽, 魏子艳, 王尚, 邓晔. 单细胞测序技术在微生物生态领域中的应用. 生物技术通报[J]. 2020, 36(10): 237-246, https://kns.cnki.net/KCMS/detail/detail.aspx?dbcode=CJFQ&dbname=CJFDLAST2020&filename=SWJT202010029&v=MDAwNDFyQ1VSN3VmWnVackZ5M2xWTDNJTmpyQmVyRzRITkhOcjQ5SGJZUjhlWDFMdXhZUzdEaDFUM3FUcldNMUY=.[34] 周文君. Exploring the accuracy of amplicon-based internal transcribed spacer (ITS) markers for fungal community. Molecular Ecology Resources. 2020, [35] 段云峰, 王升跃, 陈禹保, 杨瑞馥, 李后开, 朱怀球, 童贻刚, 杜文斌, 付钰, 胡松年, 王军, 辛玉华, 赵方庆, 鲍一明, 张雯, 李娟, 曾明, 牛海涛, 周欣, 李岩, 崔生辉, 袁静, 李俊桦, 王加义, 刘东来, 倪铭, 孙青, 邓晔, 朱宝利. 微生物组测序与分析专家共识. 生物工程学报[J]. 2020, 36(12): 2516-2524, http://lib.cqvip.com/Qikan/Article/Detail?id=7103610501.[36] Hu, Qiulong, Tan, Lin, Gu, Songsong, Xiao, Yansong, Xiong, Xingyao, Zeng, Weiai, Feng, Kai, Wei, Zhong, Deng, Ye. Network analysis infers the wilt pathogen invasion associated with non-detrimental bacteria. NPJ BIOFILMS AND MICROBIOMES[J]. 2020, 6(1): https://doaj.org/article/ff3f926f23a944a6af50859e8b2773c4.[37] 杜雄峰, 厉舒祯, 冯凯, 何晴, 王朱珺, 吴悦妮, 王丹蕊, 彭玺, 王尚, 邓晔. 农牧交错带草地土壤剖面微生物总量、多样性和互作网络的垂直分布特征. 微生物学通报[J]. 2020, 47(9): 2789-2806, http://lib.cqvip.com/Qikan/Article/Detail?id=7103088372.[38] Zhao, Mengxin, Cong, Jing, Cheng, Jingmin, Qi, Qi, Sheng, Yuyu, Ning, Daliang, Lu, Hui, Wyckoff, Kristen N, Deng, Ye, Li, Diqiang, Zhou, Jizhong, Zhang, Yuguang. Soil Microbial Community Assembly and Interactions Are Constrained by Nitrogen and Phosphorus in Broadleaf Forests of Southern China. FORESTS[J]. 2020, 11(3): https://doaj.org/article/fd04d70a07b44885a48199f01991a2eb.[39] 吴悦妮, 冯凯, 厉舒祯, 王朱珺, 张照婧, 邓晔. 16S/18S/ITS扩增子高通量测序引物的生物信息学评估和改进. 微生物学通报[J]. 2020, 47(9): 2897-2912, http://lib.cqvip.com/Qikan/Article/Detail?id=7103088381.[40] Feng, Kai, Wang, Shang, Wei, Ziyan, Wang, Zhujun, Zhang, Zhaojing, Wu, Yueni, Zhang, Yuguang, Deng, Ye. Niche width of above- and below-ground organisms varied in predicting biodiversity profiling along a latitudinal gradient. MOLECULAR ECOLOGY[J]. 2020, 29(10): 1890-1902, https://www.webofscience.com/wos/woscc/full-record/WOS:000530849200001.[41] Tu, Qichao, Yan, Qingyun, Deng, Ye, Michaletz, Sean T, Buzzard, Vanessa, Weiser, Michael D, Waide, Robert, Ning, Daliang, Wu, Liyou, He, Zhili, Zhou, Jizhong. Biogeographic patterns of microbial co-occurrence ecological networks in six American forests. SOIL BIOLOGY & BIOCHEMISTRY[J]. 2020, 148: http://dx.doi.org/10.1016/j.soilbio.2020.107897.[42] Wu, Yueni, Feng, Kai, Wei, Ziyan, Wang, Zhujun, Deng, Ye. ARDEP, a Rapid Degenerate Primer Design Pipeline Based onk-mers for Amplicon Microbiome Studies. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH[J]. 2020, 17(16): http://dx.doi.org/10.3390/ijerph17165958.[43] Lian, Shengyang, Qu, Yuanyuan, Li, Shuzhen, Zhang, Zhaojing, Zhang, Henglin, Dai, Chunxiao, Deng, Ye. Interaction of graphene-family nanomaterials with microbial communities in sequential batch reactors revealed by high-throughput sequencing. ENVIRONMENTAL RESEARCH[J]. 2020, 184: http://dx.doi.org/10.1016/j.envres.2020.109392.[44] Zhang, Zhaojing, Qu, Yuanyuan, Li, Shuzhen, Feng, Kai, Cai, Weiwei, Yin, Huaqun, Wang, Shang, Liu, Wenzong, Wang, Aijie, Deng, Ye. Florfenicol restructured the microbial interaction network for wastewater treatment by microbial electrolysis cells. ENVIRONMENTAL RESEARCH[J]. 2020, 183: http://dx.doi.org/10.1016/j.envres.2020.109145.[45] Li, Shuzhen, Wang, Zhujun, Wang, Yuanyuan, Song, Maoyong, Lu, Guangxin, Dang, Ning, Yin, Huaqun, Qu, Yuanyuan, Deng, Ye. Effects of graphene oxide on PCR amplification for microbial community survey. BMC MICROBIOLOGY[J]. 2020, 20(1): http://dx.doi.org/10.1186/s12866-020-01965-7.[46] Tai, Xin, Li, Rui, Zhang, Bao, Yu, Hao, Kong, Xiao, Bai, Zhihui, Deng, Ye, Jia, Lan, Jin, Decai. Pollution Gradients Altered the Bacterial Community Composition and Stochastic Process of Rural Polluted Ponds. MICROORGANISMS[J]. 2020, 8(2): https://doaj.org/article/5a753f7a9abe41789d50412cbb08131f.[47] He, Zhili, Deng, Ye, Xu, Meiying, Li, Juan, Liang, Junyi, Xiong, Jinbo, Yu, Hao, Wu, Bo, Wu, Liyou, Xue, Kai, Shi, Shengjing, Carrillo, Yolima, Van Nostrand, Joy D, Hobbie, Sarah E, Reich, Peter B, Schadt, Christopher W, Kent, Angela D, Pendall, Elise, Wallenstein, Matthew, Luo, Yiqi, Yan, Qingyun, Zhou, Jizhong. Microbial functional genes commonly respond to elevated carbon dioxide. ENVIRONMENT INTERNATIONAL[J]. 2020, 144: http://dx.doi.org/10.1016/j.envint.2020.106068.[48] Li, Shuzhen, Deng, Ye, Wang, Zhujun, Zhang, Zhaojing, Kong, Xiao, Zhou, Wenjun, Yi, Yanyun, Qu, Yuanyuan. Exploring the accuracy of amplicon-based internal transcribed spacer markers for a fungal community. MOLECULAR ECOLOGY RESOURCES[J]. 2020, 20(1): 170-184, https://www.webofscience.com/wos/woscc/full-record/WOS:000494520400001.[49] 厉舒祯, 邓晔, 张照婧, 曲媛媛. 生物降解芳香族化合物的分子检测技术研究进展. 中国环境科学[J]. 2019, 39(6): 2577-2587, http://lib.cqvip.com/Qikan/Article/Detail?id=7002213609.[50] Qin, Huayu, Wang, Shang, Feng, Kai, He, Zhili, Virta, Marko P J, Hou, Weiguo, Dong, Hailiang, Deng, Ye. Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR. MICROBIOME[J]. 2019, 7(1): https://doaj.org/article/98a85da2510846ba9312afc83927abb2.[51] Feng, Kai, Zhang, Yuguang, He, Zhili, Ning, Daliang, Deng, Ye. Interdomain ecological networks between plants and microbes. MOLECULAR ECOLOGY RESOURCES[J]. 2019, 19(6): 1565-1577, http://dx.doi.org/10.1111/1755-0998.13081.[52] Zhu, Tingting, Cai, Weiwei, Wang, Bo, Liu, Wenzong, Feng, Kai, Deng, Ye, Wang, Aijie. Enhanced nitrate removal in an Fe-0-driven autotrophic denitrification system using hydrogen-rich water. ENVIRONMENTAL SCIENCE-WATER RESEARCH & TECHNOLOGY[J]. 2019, 5(8): 1380-1388, https://www.webofscience.com/wos/woscc/full-record/WOS:000477038200002.[53] Yang, Yuzhan, Gao, Yangchun, Huang, Xuena, Ni, Ping, Wu, Yueni, Deng, Ye, Zhan, Aibin. Adaptive shifts of bacterioplankton communities in response to nitrogen enrichment in a highly polluted river. ENVIRONMENTAL POLLUTION[J]. 2019, 245: 290-299, http://dx.doi.org/10.1016/j.envpol.2018.11.002.[54] Liang, Bin, Ma, Jincai, Cai, Weiwei, Li, Zhiling, Liu, Wenzong, Qi, Mengyuan, Zhao, Youkang, Ma, Xiaodan, Deng, Ye, Wang, Aijie, Zhou, Jizhong. Response of chloramphenicol-reducing biocathode resistome to continuous electrical stimulation. WATER RESEARCH[J]. 2019, 148: 398-406, http://dx.doi.org/10.1016/j.watres.2018.10.073.[55] Zhujun Wang, Guangxin Lu, Mengting Yuan, Hao Yu, Shang Wang, Xin Li, Ye Deng. Elevated temperature overrides the effects of N amendment in Tibetan grassland on soil microbiome. Soil Biology and Biochemistry. 2019, 136: 107532-, http://dx.doi.org/10.1016/j.soilbio.2019.107532.[56] Kong, Xiao, Jin, Decai, Tai, Xin, Yu, Hao, Duan, Guilan, Yan, Xiulan, Pan, Jiangang, Song, Junhua, Deng, Ye. Bioremediation of dibutyl phthalate in a simulated agricultural ecosystem by Gordonia sp. strain QH-11 and the microbial ecological effects in soil. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2019, 667: 691-700, http://ir.igsnrr.ac.cn/handle/311030/48641.[57] Cai, Weiwei, Liu, Wenzong, Zhang, Zhaojing, Feng, Kai, Ren, Ge, Pu, Chuanliang, Li, Jiaqi, Deng, Ye, Wang, Aijie. Electro-driven methanogenic microbial community diversity and variability in the electron abundant niche. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2019, 661: 178-186, http://dx.doi.org/10.1016/j.scitotenv.2019.01.131.[58] Gu, Songsong, Hu, Qiulong, Liu, Zhonghua, Xiao, Wenjun, Gong, Zhihua, Cheng, Yuqi, Deng, Ye, Feng, Kai, Tan, Lin. Comparative Study on Soil Microbial Community Structure and Diversity in Five Tea (Camellia sinensis) Cultivars. INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY[J]. 2019, 22(6): 1553-1559, http://dx.doi.org/10.17957/IJAB/15.1234.[59] 何晴, 王尚, 邓晔. 分子生物学技术在热泉地质微生物学研究中的应用. 微生物学报[J]. 2019, 59(6): 996-1011, http://lib.cqvip.com/Qikan/Article/Detail?id=7002209577.[60] Gu, Songsong, Hu, Qiulong, Cheng, Yuqi, Bai, Lianyang, Liu, Zhonghua, Xiao, Wenjun, Gong, Zhihua, Wu, Yueni, Feng, Kai, Deng, Ye, Tan, Lin. Application of organic fertilizer improves microbial community diversity and alters microbial network structure in tea (Camellia sinensis) plantation soils. SOIL & TILLAGE RESEARCH[J]. 2019, 195: http://dx.doi.org/10.1016/j.still.2019.104356.[61] Kong, Xiao, Jin, Decai, Wang, Xinxin, Zhang, Fengsong, Duan, Guilan, Liu, Huijun, Jia, Minghong, Deng, Ye. Dibutyl phthalate contamination remolded the fungal community in agro-environmental system. CHEMOSPHERE[J]. 2019, 215: 189-198, http://ir.igsnrr.ac.cn/handle/311030/51528.[62] Zhang, Zhaojing, Deng, Ye, Feng, Kai, Cai, Weiwei, Li, Shuzhen, Yin, Huaqun, Xu, Meiying, Ning, Daliang, Qu, Yuanyuan. Deterministic Assembly and Diversity Gradient Altered the Biofilm Community Performances of Bioreactors. ENVIRONMENTAL SCIENCE & TECHNOLOGY[J]. 2019, 53(3): 1315-1324, https://www.webofscience.com/wos/woscc/full-record/WOS:000458220600029.[63] Ning, Daliang, Deng, Ye, Tiedje, James M, Zhou, Jizhong. A general framework for quantitatively assessing ecological stochasticity. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2019, 116(34): 16892-16898, http://dx.doi.org/10.1073/pnas.1904623116.[64] Liu, Yangying, Wang, Shang, Wang, Zhujun, Zhang, Zhaojing, Qin, Huayu, Wei, Ziyan, Feng, Kai, Li, Shuzhen, Wu, Yueni, Yin, Huaqun, Li, Hui, Deng, Ye. Soil microbiome mediated nutrients decline during forest degradation process. 土壤生态学快报(英文)[J]. 2019, 1(1): 59-71, http://lib.cqvip.com/Qikan/Article/Detail?id=7106177590.[65] Zhang, Zhuo, Kong, Xiao, Jin, Decai, Yu, Hao, Zhu, Xun, Su, Xiaofeng, Wang, Pei, Zhang, Ruiyong, Jia, Minghong, Deng, Ye. Euonymus japonicus phyllosphere microbiome is significantly changed by powdery mildew. ARCHIVES OF MICROBIOLOGY[J]. 2019, 201(8): 1099-1109, [66] Buzzard, Vanessa, Michaletz, Sean T, Deng, Ye, He, Zhili, Ning, Daliang, Shen, Lina, Tu, Qichao, Van Nostrand, Joy D, Voordeckers, James W, Wang, Jianjun, Weiser, Michael D, Kaspari, Michael, Waide, Robert B, Zhou, Jizhong, Enquist, Brian J. Continental scale structuring of forest and soil diversity via functional traits. NATURE ECOLOGY & EVOLUTION[J]. 2019, 3(9): 1298-1308, http://dx.doi.org/10.1038/s41559-019-0954-7.[67] Wei, Ziyan, Wu, Yueni, Feng, Kai, Yang, Min, Zhang, Yu, Tu, Qichao, Wang, Jun, Deng, Ye. ARGA, a pipeline for primer evaluation on antibiotic resistance genes. ENVIRONMENT INTERNATIONAL[J]. 2019, 128: 137-145, http://dx.doi.org/10.1016/j.envint.2019.04.030.[68] Nana Liu, Huifeng Hu, Wenhong Ma, Ye Deng, Yuqing Liu, Baihui Hao, Xinying Zhang, Dimitar Dimitrov, Xiaojuan Feng, Zhiheng Wang. Contrasting Biogeographic Patterns of Bacterial and Archaeal Diversity in the Top- and Subsoils of Temperate Grasslands. MSYSTEMS[J]. 2019, 4(5): https://doaj.org/article/7102455573224e33bcd1515db694d837.[69] Sun, Haishu, Xu, Shengjun, Wu, Shanghua, Wang, Rui, Zhuang, Guoqiang, Bai, Zhihui, Deng, Ye, Zhuang, Xuliang. Enhancement of facultative anaerobic denitrifying communities by oxygen release from roots of the macrophyte in constructed wetlands. JOURNAL OF ENVIRONMENTAL MANAGEMENT[J]. 2019, 246: 157-163, http://dx.doi.org/10.1016/j.jenvman.2019.05.136.[70] 杜雄峰, 于皓, 王尚, 邓晔. 宏基因组方法揭示草地土壤微生物群落响应全球变化. 生态学杂志[J]. 2019, 38(11): 3516-3526, http://lib.cqvip.com/Qikan/Article/Detail?id=7100347195.[71] Tu, Qichao, Lin, Lu, Cheng, Lei, Deng, Ye, He, Zhili. NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes. BIOINFORMATICS[J]. 2019, 35(6): 1040-1048, [72] Wang, Zhujun, Lu, Guangxin, Yuan, Mengting, Yu, Hao, Wang, Shang, Li, Xin, Deng, Ye. Elevated temperature overrides the effects of N amendment in Tibetan grassland on soil microbiome. SOIL BIOLOGY & BIOCHEMISTRY[J]. 2019, 136: 107532-, http://dx.doi.org/10.1016/j.soilbio.2019.107532.[73] Yuan, Mengting M, Zhang, Jin, Xue, Kai, Wu, Liyou, Deng, Ye, Deng, Jie, Hale, Lauren, Zhou, Xishu, He, Zhili, Yang, Yunfeng, Van Nostrand, Joy D, Schuur, Edward A G, Konstantinidis, Konstantinos T, Penton, Christopher R, Cole, James R, Tiedje, James M, Luo, Yiqi, Zhou, Jizhong. Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil. GLOBAL CHANGE BIOLOGY[J]. 2018, 24(1): 297-307, http://dx.doi.org/10.1111/gcb.13820.[74] Kong, Xiao, Jin, Decai, Jin, Shulan, Wang, Zhigang, Yin, Huaqun, Xu, Meiying, Deng, Ye. Responses of bacterial community to dibutyl phthalate pollution in a soil- vegetable ecosystem. JOURNAL OF HAZARDOUS MATERIALS[J]. 2018, 353: 142-150, http://ir.rcees.ac.cn/handle/311016/41293.[75] Wu, Yueni, Yang, Yuzhan, Cao, Lei, Yin, Huaqun, Xu, Meiying, Wang, Zhujun, Liu, Yangying, Wang, Xin, Deng, Ye. Habitat environments impacted the gut microbiome of long-distance migratory swan geese but central species conserved. SCIENTIFIC REPORTS[J]. 2018, 8(1): https://doaj.org/article/1d2172401ece45209021e63f535730dc.[76] Jin, Decai, Kong, Xiao, Wang, Jie, Sun, Jiajun, Yu, Xiangyang, Zhuang, Xuliang, Deng, Ye, Bai, Zhihui. Chitinophaga caeni sp nov., isolated from activated sludge. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY[J]. 2018, 68(7): 2209-2213, http://ir.rcees.ac.cn/handle/311016/41241.[77] Li, Ming, Sun, Shuqian, Li, Bo, Asghari, Hossein, Deng, Ye, Li, Wei, Zhu, Ninghua. Time-bandwidth compression of microwave signals. OPTICS EXPRESS[J]. 2018, 26(2): 990-999, https://www.webofscience.com/wos/woscc/full-record/WOS:000422935900056.[78] Xu, Shengjun, Feng, Shugeng, Sun, Haishu, Wu, Shanghua, Zhuang, Guoqiang, Deng, Ye, Bai, Zhihui, Jing, Chuanyong, Zhuang, Xuliang. Linking N2O Emissions from Biofertilizer-Amended Soil of Tea Plantations to the Abundance and Structure of N2O-Reducing Microbial Communities. ENVIRONMENTAL SCIENCE & TECHNOLOGY[J]. 2018, 52(19): 11338-11345, http://ir.rcees.ac.cn/handle/311016/41275.[79] Deng, Ye, Ning, Daliang, Qin, Yujia, Xue, Kai, Wu, Liyou, He, Zhili, Yin, Huaqun, Liang, Yuting, Buzzard, Vanessa, Michaletz, Sean T, Zhou, Jizhong. Spatial scaling of forest soil microbial communities across a temperature gradient. ENVIRONMENTAL MICROBIOLOGY[J]. 2018, 20(10): 3504-3513, http://ir.rcees.ac.cn/handle/311016/41295.[80] Li, Hui, Xu, Zhuwen, Yan, Qingyun, Yang, Shan, Van Nostrand, Joy D, Wang, Zhirui, He, Zhili, Zhou, Jizhong, Jiang, Yong, Deng, Ye. Soil microbial beta-diversity is linked with compositional variation in aboveground plant biomass in a semi-arid grassland. PLANT AND SOIL[J]. 2018, 423(1-2): 465-480, http://dx.doi.org/10.1007/s11104-017-3524-2.[81] Yu, Hao, Deng, Ye, He, Zhili, Van Nostrand, Joy D, Wang, Shang, Jin, Decai, Wang, Aijie, Wu, Liyou, Wang, Daohan, Tai, Xin, Zhou, Jizhong. Elevated CO2 and Warming Altered Grassland Microbial Communities in Soil Top-Layers. FRONTIERS IN MICROBIOLOGY[J]. 2018, 9: https://doaj.org/article/d762ce40090f4fb29ad50791892dbc79.[82] Liu, Wenzong, Piao, Yongjian, Zhang, Fugui, Liu, Lin, Meng, Dongfang, Nan, Jun, Deng, Ye, Wang, Aijie. Hydrogen consumption and methanogenic community evolution in anodophilic biofilms in single chamber microbial electrolysis cells under different startup modes. ENVIRONMENTAL SCIENCE-WATER RESEARCH & TECHNOLOGY[J]. 2018, 4(11): 1839-1850, http://ir.rcees.ac.cn/handle/311016/41269.[83] Liu, Shengen, Wang, Hang, Deng, Ye, Tian, Peng, Wang, Qingkui. Forest conversion induces seasonal variation in microbial beta-diversity. ENVIRONMENTAL MICROBIOLOGY[J]. 2018, 20(1): 111-123, http://ir.rcees.ac.cn/handle/311016/41263.[84] Ren, Ge, Ma, Anzhou, Zhang, Yanfen, Deng, Ye, Zheng, Guodong, Zhuang, Xuliang, Zhuang, Guoqiang, Fortin, Danielle. Electron acceptors for anaerobic oxidation of methane drive microbial community structure and diversity in mud volcanoes. ENVIRONMENTAL MICROBIOLOGY[J]. 2018, 20(7): 2370-2385, http://ir.rcees.ac.cn/handle/311016/41251.[85] Jin, Decai, Kong, Xiao, Cui, Bingjian, Jin, Shulan, Xie, Yunfeng, Wang, Xingrun, Deng, Ye. Bacterial communities and potential waterborne pathogens within the typical urban surface waters. SCIENTIFIC REPORTS[J]. 2018, 8(1): http://ir.rcees.ac.cn/handle/311016/41237.[86] Wei, Ziyan, Liu, Yangying, Feng, Kai, Li, Shuzhen, Wang, Shang, Jin, Decai, Zhang, Yu, Chen, Hongrui, Yin, Huaqun, Xu, Meiying, Deng, Ye. The divergence between fungal and bacterial communities in seasonal and spatial variations of wastewater treatment plants. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2018, 628-629: 969-978, http://ir.rcees.ac.cn/handle/311016/41300.[87] He, Jinzhi, Tu, Qichao, Ge, Yichen, Qin, Yujia, Cui, Bomiao, Hu, Xiaoyu, Wang, Yuxia, Deng, Ye, Wang, Kun, Van Nostrand, Joy D, Li, Jiyao, Zhou, Jizhong, Li, Yan, Zhou, Xuedong. Taxonomic and Functional Analyses of the Supragingival Microbiome from Caries-Affected and Caries-Free Hosts. MICROBIAL ECOLOGY[J]. 2018, 75(2): 543-554, https://www.webofscience.com/wos/woscc/full-record/WOS:000418740200025.[88] Yu, Hao, He, Zhili, Wang, Aijie, Xie, Jianping, Wu, Liyou, Van Nostrand, Joy D, Jin, Decai, Shao, Zhimin, Schadt, Christopher W, Zhou, Jizhong, Deng, Ye. Divergent Responses of Forest Soil Microbial Communities under Elevated CO2 in Different Depths of Upper Soil Layers. APPLIED AND ENVIRONMENTAL MICROBIOLOGY[J]. 2018, 84(1): http://dx.doi.org/10.1128/AEM.01694-17.[89] Cai, Weiwei, Liu, Wenzong, Zhang, Zhaojing, Feng, Kai, Ren, Ge, Pu, Chuanliang, Sun, Haishu, Li, Jiaqi, Deng, Ye, Wang, Aijie. mcrA sequencing reveals the role of basophilic methanogens in a cathodic methanogenic community. WATER RESEARCH[J]. 2018, 136: 192-199, http://ir.rcees.ac.cn/handle/311016/41276.[90] Wang, Shang, Wang, Xiaobo, Han, Xingguo, Deng, Ye. Higher precipitation strengthens the microbial interactions in semi-arid grassland soils. GLOBAL ECOLOGY AND BIOGEOGRAPHY[J]. 2018, 27(5): 570-580, http://ir.rcees.ac.cn/handle/311016/41268.[91] Jing Tian, Nianpeng He, Weidong Kong, Ye Deng, Kai Feng, Sophie M Green, Xiaobo Wang, Jizhong Zhou, Yakov Kuzyakov, Guirui Yu. Deforestation decreases spatial turnover and alters the network interactions in soil bacterial communities. Soil Biology and Biochemistry. 2018, 123: 80-86, http://dx.doi.org/10.1016/j.soilbio.2018.05.007.[92] Wei, Ziyan, Feng, Kai, Li, Shuzhen, Zhang, Yu, Chen, Hongrui, Yin, Huaqun, Xu, Meiying, Deng, Ye. Exploring abundance, diversity and variation of a widespread antibiotic resistance gene in wastewater treatment plants. ENVIRONMENT INTERNATIONAL[J]. 2018, 117: 186-195, http://ir.rcees.ac.cn/handle/311016/41258.[93] Tian, Jing, He, Nianpeng, Kong, Weidong, Deng, Ye, Feng, Kai, Green, Sophie M, Wang, Xiaobo, Zhou, Jizhong, Kuzyakov, Yakov, Yu, Guirui. Deforestation decreases spatial turnover and alters the network interactions in soil bacterial communities. SOIL BIOLOGY & BIOCHEMISTRY[J]. 2018, 123: 80-86, http://dx.doi.org/10.1016/j.soilbio.2018.05.007.[94] Ye Deng. Reply to "Pseudoreplication in a continental-scale forest soil microbial diversity study". Nature Communications. 2017, [95] 刘洋荧, 王尚, 厉舒祯, 邓晔. 基于功能基因的微生物碳循环分子生态学研究进展. 微生物学通报[J]. 2017, 44(7): 1676-1689, http://ir.rcees.ac.cn/handle/311016/38159.[96] Sun, Haishu, Liu, Feng, Xu, Shengjun, Wu, Shanghua, Zhuang, Guoqiang, Deng, Ye, Wu, Jinshui, Zhuang, Xuliang. Myriophyllum aquaticum Constructed Wetland Effectively Removes Nitrogen in Swine Wastewater. FRONTIERS IN MICROBIOLOGY[J]. 2017, 8: https://doaj.org/article/0253d9414fa04739af8ca5065bb8185d.[97] Feng, Kai, Zhang, Zhaojing, Cai, Weiwei, Liu, Wenzong, Xu, Meiying, Yin, Huaqun, Wang, Aijie, He, Zhili, Deng, Ye. Biodiversity and species competition regulate the resilience of microbial biofilm community. MOLECULAR ECOLOGY[J]. 2017, 26(21): 6170-6182, https://www.webofscience.com/wos/woscc/full-record/WOS:000415362500022.[98] Li, Ping, Jiang, Zhou, Wang, Yanhong, Deng, Ye, Van Nostrand, Joy D, Yuan, Tong, Liu, Han, Wei, Dazhun, Zhou, Jizhong. Analysis of the functional gene structure and metabolic potential of microbial community in high arsenic groundwater. WATER RESEARCH[J]. 2017, 123: 268-276, http://dx.doi.org/10.1016/j.watres.2017.06.053.[99] Zhaojing Zhang, Yuanyuan Qu, Shuzhen Li, Kai Feng, Shang Wang, Weiwei Cai, Yuting Liang, Hui Li, Meiying Xu, Huaqun Yin, Ye Deng. Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa. SCIENTIFIC REPORTS[J]. 2017, 7(1): https://doaj.org/article/156292a579b74e1ba7e5c6f3014eaa80.[100] 厉舒祯, 沈文丽, 邓晔, 裴晓芳, 由胜男, 张照婧, 王经伟, 张旭旺, 曲媛媛. 微生物还原Se（VI）和Se（IV）合成SeNPs机理研究新进展. 应用与环境生物学报[J]. 2017, 23(3): 579-585, [101] Bai, Ren, Wang, JunTao, Deng, Ye, He, JiZheng, Feng, Kai, Zhang, LiMei. Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers. FRONTIERS IN MICROBIOLOGY[J]. 2017, 8: https://doaj.org/article/818f50b343bd4ca684f37c0275b9c8c4.[102] Li, Hui, Yang, Shan, Xu, Zhuwen, Yan, Qingyun, Li, Xiaobin, van Nostrand, Joy D, He, Zhili, Yao, Fei, Han, Xingguo, Zhou, Jizhong, Deng, Ye, Jiang, Yong. Responses of soil microbial functional genes to global changes are indirectly influenced by aboveground plant biomass variation. SOIL BIOLOGY & BIOCHEMISTRY[J]. 2017, 104(1): 18-29, http://dx.doi.org/10.1016/j.soilbio.2016.10.009.[103] Dai, Wenfang, Zhang, Jinjie, Tu, Qichao, Deng, Ye, Qiu, Qiongfen, Xiong, Jinbo. Bacterioplankton assembly and interspecies interaction indicating increasing coastal eutrophication. CHEMOSPHERE[J]. 2017, 177: 317-325, http://ir.rcees.ac.cn/handle/311016/39611.[104] Wang, XiaoBo, Lu, XiaoTao, Yao, Jing, Wang, ZhengWen, Deng, Ye, Cheng, WeiXin, Zhou, JiZhong, Han, XingGuo. Habitat-specific patterns and drivers of bacterial beta-diversity in China's drylands. ISME JOURNAL[J]. 2017, 11(6): 1345-1358, http://dx.doi.org/10.1038/ismej.2017.11.[105] Chen, YongLiang, Xu, TianLe, Veresoglou, Stavros D, Hu, HangWei, Hao, ZhiPeng, Hu, YaJun, Liu, Lei, Deng, Ye, Rillig, Matthias C, Chen, BaoDong. Plant diversity represents the prevalent determinant of soil fungal community structure across temperate grasslands in northern China. SOIL BIOLOGY & BIOCHEMISTRY[J]. 2017, 110(7): 12-21, http://dx.doi.org/10.1016/j.soilbio.2017.02.015.[106] Wen, Chongqing, Wu, Liyou, Qin, Yujia, Van Nostrand, Joy D, Ning, Daliang, Sun, Bo, Xue, Kai, Liu, Feifei, Deng, Ye, Liang, Yuting, Zhou, Jizhong. Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform. PLOS ONE[J]. 2017, 12(4): https://doaj.org/article/e68bbe2a174e4b36b9205089f69e865a.[107] 吴波, 冯凯, 职晓阳, 何强, 许玫英, 邓晔, 肖凡书, 汪善全, 于玲, 鲁祺鸿, 连英丽, 罗丽娟, 原珂, 陈保卫, 颜庆云, 仇荣亮, 栾天罡, 贺志理. 环境微生物组多样性及功能研究进展. 中山大学学报：自然科学版[J]. 2017, 56(5): 1-11, http://lib.cqvip.com/Qikan/Article/Detail?id=673386086.[108] Zhang, Yuguang, Liu, Xiao, Cong, Jing, Lu, Hui, Sheng, Yuyu, Wang, Xiulei, Li, Diqiang, Liu, Xueduan, Yin, Huaqun, Zhou, Jizhong, Deng, Ye. The microbially mediated soil organic carbon loss under degenerative succession in an alpine meadow. MOLECULAR ECOLOGY[J]. 2017, 26(14): 3676-3686, https://www.webofscience.com/wos/woscc/full-record/WOS:000404618000009.[109] Chen, YongLiang, Deng, Ye, Ding, JinZhi, Hu, HangWei, Xu, TianLe, Li, Fei, Yang, GuiBiao, Yang, YuanHe. Distinct microbial communities in the active and permafrost layers on the Tibetan Plateau. MOLECULAR ECOLOGY[J]. 2017, 26(23): 6608-6620, http://ir.ibcas.ac.cn/handle/2S10CLM1/15955.[110] 张照婧, 王经伟, 张旭旺, 曲媛媛, 厉舒祯, 沈文丽, 邓晔, 裴晓芳, 由胜男. 微生物还原Se（Ⅵ）和Se（Ⅳ）合成SeNPs机理研究新进展. 应用与环境生物学报[J]. 2017, 579-585, http://ir.rcees.ac.cn/handle/311016/38158.[111] Zheng, Wei, Xue, Dongmei, Li, Xiangzhen, Deng, Ye, Rui, Junpeng, Feng, Kai, Wang, Zhongliang. The responses and adaptations of microbial communities to salinity in farmland soils: A molecular ecological network analysis. APPLIED SOIL ECOLOGY[J]. 2017, 120: 239-246, http://dx.doi.org/10.1016/j.apsoil.2017.08.019.[112] Zhang, Xiaoxia, Zhang, Ruijie, Gao, Jusheng, Wang, Xiucheng, Fan, Fenliang, Ma, Xiaotong, Yin, Huaqun, Zhang, Caiwen, Feng, Kai, Deng, Ye. Thirty-one years of rice-rice-green manure rotations shape the rhizosphere microbial community and enrich beneficial bacteria. SOIL BIOLOGY & BIOCHEMISTRY[J]. 2017, 104: 208-217, http://ir.rcees.ac.cn/handle/311016/39656.[113] Zhang, Ping, He, Zhili, Van Nostrand, Joy D, Qin, Yujia, Deng, Ye, Wu, Liyou, Tu, Qichao, Wang, Jianjun, Schadt, Christopher W, Fields, Matthew W, Hazen, Terry C, Arkin, Adam P, Stahl, David A, Zhou, Jizhong. Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer. ENVIRONMENTAL SCIENCE & TECHNOLOGY[J]. 2017, 51(7): 3609-3620, http://159.226.73.51/handle/332005/17276.[114] Ye Deng. Soil microbial quantification approaches coupling with relative abundances reflecting the changes of taxa in different locations. Scientific Reports. 2017, [115] Jin, Decai, Kong, Xiao, Jia, Minghong, Yu, Xiangyang, Wang, Xinxin, Zhuang, Xuliang, Deng, Ye, Bai, Zhihui. Gordonia phthalatica sp nov., a di-n-butyl phthalate-degrading bacterium isolated from activated sludge. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY[J]. 2017, 67(12): 5128-5133, http://ir.rcees.ac.cn/handle/311016/39635.[116] Jizhong Zhou, Ye Deng, Lina Shen, Chongqing Wen, Qingyun Yan, Daliang Ning, Yujia Qin, Kai Xue, Liyou Wu, Zhili He, James W Voordeckers, Joy D Van Nostrand, Vanessa Buzzard, Sean T Michaletz, Brian J Enquist, Michael D Weiser, Michael Kaspari, Robert Waide, Yunfeng Yang, James H Brown. Temperature mediates continental-scale diversity of microbes in forest soils. NATURE COMMUNICATIONS[J]. 2016, 7(1): http://ir.rcees.ac.cn/handle/311016/36149.[117] Xue, Kai, Xie, Jianping, Zhou, Aifen, Liu, Feifei, Li, Dejun, Wu, Liyou, Deng, Ye, He, Zhili, Van Nostrand, Joy D, Luo, Yiqi, Zhou, Jizhong. Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning. FRONTIERS IN MICROBIOLOGY[J]. 2016, 7: http://dx.doi.org/10.3389/fmicb.2016.00668.[118] Tu, Qichao, Deng, Ye, Yan, Qingyun, Shen, Lina, Lin, Lu, He, Zhili, Wu, Liyou, Van Nostrand, Joy D, Buzzard, Vanessa, Michaletz, Sean T, Enquist, Brian J, Weiser, Michael D, Kaspari, Michael, Waide, Robert B, Brown, James H, Zhou, Jizhong. Biogeographic patterns of soil diazotrophic communities across six forests in the North America. MOLECULAR ECOLOGY[J]. 2016, 25(12): 2937-2948, http://ir.rcees.ac.cn/handle/311016/36105.[119] Wang, Yu, Zhang, Rui, Zheng, Qiang, Deng, Ye, Van Nostrand, Joy D, Zhou, Jizhong, Jiao, Nianzhi. Bacterioplankton community resilience to ocean acidification: evidence from microbial network analysis. ICES JOURNAL OF MARINE SCIENCE[J]. 2016, 73(3): 865-875, http://ir.rcees.ac.cn/handle/311016/36099.[120] Wang, Xiaohui, Wen, Xianghua, Deng, Ye, Xia, Yu, Yang, Yunfeng, Zhou, Jizhong. Distance-Decay Relationship for Biological Wastewater Treatment Plants. APPLIED AND ENVIRONMENTAL MICROBIOLOGY[J]. 2016, 82(16): 4860-4866, http://dx.doi.org/10.1128/AEM.01071-16.[121] Jin, Decai, Kong, Xiao, Li, Honghong, Luo, Luyun, Zhuang, Xuliang, Zhuang, Guoqiang, Deng, Ye, Bai, Zhihui. Patulibacter brassicae sp nova., isolated from rhizosphere soil of Chinese cabbage (Brassica campestris). INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY[J]. 2016, 66: 5056-5060, [122] Ye Deng. s there a distance-decay relationship in biological wastewater treatment plants?. Applied and environmental microbiology. 2016, [123] Zhang, Yuguang, Cong, Jing, Lu, Hui, Deng, Ye, Liu, Xiao, Zhou, Jizhong, Li, Diqiang. Soil bacterial endemism and potential functional redundancy in natural broadleaf forest along a latitudinal gradient. SCIENTIFIC REPORTS[J]. 2016, 6: http://ir.rcees.ac.cn/handle/311016/36146.[124] Deng, Ye, Xu, Su, Zhang, Runren, Zheng, Bin, Chen, Hua, Gao, Fei, Yu, Faxin, Zhang, Baile, Chen, Hongsheng. Ultra-broadband carpet cloak for transverse-electric polarization. JOURNAL OF OPTICS[J]. 2016, 18(4): https://www.webofscience.com/wos/woscc/full-record/WOS:000375753700007.[125] Cai, Weiwei, Zhang, Zhaojing, Ren, Ge, Shen, Qiuxuan, Hou, Yanan, Ma, Anzhou, Deng, Ye, Wang, Aijie, Liu, Wenzong. Quorum sensing alters the microbial community of electrode-respiring bacteria and hydrogen scavengers toward improving hydrogen yield in microbial electrolysis cells. APPLIED ENERGY[J]. 2016, 183: 1133-1141, http://dx.doi.org/10.1016/j.apenergy.2016.09.074.[126] Deng, Ye, Zhang, Ping, Qin, Yujia, Tu, Qichao, Yang, Yunfeng, He, Zhili, Schadt, Christopher Warren, Zhou, Jizhong. Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation. ENVIRONMENTAL MICROBIOLOGY[J]. 2016, 18(1): 205-218, http://dx.doi.org/10.1111/1462-2920.12981.[127] Jin, Decai, Kong, Xiao, Liu, Huijun, Wang, Xinxin, Deng, Ye, Jia, Minghong, Yu, Xiangyang. Characterization and Genomic Analysis of a Highly Efficient Dibutyl Phthalate-Degrading Bacterium Gordonia sp Strain QH-12. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES[J]. 2016, 17(7): http://ir.rcees.ac.cn/handle/311016/36108.[128] De-Cai Jin, Zhihui Bai. Patulibacter brassicae sp. nov., isolated from rhizosphere soil of Chinese cabbage (Brassica campestris). International Journal of Systematic and Evolutionary Microbiology[J]. 2016, [129] 厉舒祯, 沈文丽, 刘洋荧, 邓晔, 由胜男, 裴晓芳, 李会杰, 张照婧, 曲媛媛. 真菌介导的纳米金合成及其应用研究进展. 环境科学与技术[J]. 2016, 39(9): 82-, http://ir.rcees.ac.cn/handle/311016/36704.[130] Shen, Congcong, Shi, Yu, Ni, Yingying, Deng, Ye, Van Nostrand, Joy D, He, Zhili, Zhou, Jizhong, Chu, Haiyan. Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain. FRONTIERS IN MICROBIOLOGY[J]. 2016, 7: http://www.corc.org.cn/handle/1471x/2374460.[131] Liang, Yuting, Zhao, Huihui, Deng, Ye, Zhou, Jizhong, Li, Guanghe, Sun, Bo. Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes. FRONTIERS IN MICROBIOLOGY[J]. 2016, 7: https://doaj.org/article/1bb546f3caa445d1b8443c48c6c718d5.[132] Yuan, HaiYan, Ding, LongJun, Wang, Ning, Chen, SongCan, Deng, Ye, Li, XiaoMing, Zhu, YongGuan. Geographic distance and amorphous iron affect the abundance and distribution of Geobacteraceae in paddy soils in China. JOURNAL OF SOILS AND SEDIMENTS[J]. 2016, 16(12): 2657-2665, http://ir.rcees.ac.cn/handle/311016/35593.[133] Niu, Jiaojiao, Deng, Jie, Xiao, Yunhua, He, Zhili, Zhang, Xian, Van Nostrand, J D, Liang, Yili, Deng, Ye, Liu, Xueduan, Yin, Huaqun. The shift of microbial communities and their roles in sulfur and iron cycling in a copper ore bioleaching system. SCIENTIFIC REPORTS[J]. 2016, 6: http://dx.doi.org/10.1038/srep34744.[134] Deng, Ye, He, Zhili, Xiong, Jinbo, Yu, Hao, Xu, Meiying, Hobbie, Sarah E, Reich, Peter B, Schadt, Christopher W, Kent, Angela, Pendall, Elise, Wallenstein, Matthew, Zhou, Jizhong. Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities. GLOBAL CHANGE BIOLOGY[J]. 2016, 22(2): 957-964, http://ir.rcees.ac.cn/handle/311016/36124.[135] Jin, Decai, Zhu, Ying, Wang, Xinxin, Kong, Xiao, Liu, Huijun, Wang, Yafeng, Deng, Ye, Jia, Minghong. Draft Genome Sequence of Sphingobium yanoikuyae TJ, a Halotolerant Di-n-Butyl-Phthalate-Degrading Bacterium. MICROBIOLOGY RESOURCE ANNOUNCEMENTS[J]. 2016, 4(3): [136] Yang, Yuzhan, Deng, Ye, Cao, Lei. Characterising the interspecific variations and convergence of gut microbiota in Anseriformes herbivores at wintering areas. SCIENTIFIC REPORTS[J]. 2016, 6: http://ir.rcees.ac.cn/handle/311016/36107.[137] Xu, Tianle, Veresoglou, Stavros D, Chen, Yongliang, Rillig, Matthias C, Xiang, Dan, Ondrej, Daniel, Hao, Zhipeng, Liu, Lei, Deng, Ye, Hu, Yajun, Chen, Weiping, Wang, Juntao, He, Jizheng, Chen, Baodong. Plant community, geographic distance and abiotic factors play different roles in predicting AMF biogeography at the regional scale in northern China. ENVIRONMENTAL MICROBIOLOGY REPORTS[J]. 2016, 8(6): 1048-1057, http://dx.doi.org/10.1111/1758-2229.12485.[138] 邓晔, 冯凯, 魏子艳, 刘文宗, 梁玉婷, 金德才. 宏基因组学在环境工程领域的应用及研究进展. 环境工程学报[J]. 2016, 10(7): 3373-3382, http://ir.rcees.ac.cn/handle/311016/36698.[139] Cong, Jing, Liu, Xueduan, Lu, Hui, Xu, Han, Li, Yide, Deng, Ye, Li, Diqiang, Zhang, Yuguang. Available nitrogen is the key factor influencing soil microbial functional gene diversity in tropical rainforest. BMC MICROBIOLOGY[J]. 2015, 15(1): http://dx.doi.org/10.1186/s12866-015-0491-8.[140] Ding, Junjun, Zhang, Yuguang, Wang, Mengmeng, Sun, Xin, Cong, Jing, Deng, Ye, Lu, Hui, Yuan, Tong, Van Nostrand, Joy D, Li, Diqiang, Zhou, Jizhong, Yang, Yunfeng. Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests. MOLECULAR ECOLOGY[J]. 2015, 24(20): 5175-5185, http://ir.rcees.ac.cn/handle/311016/32851.[141] 魏子艳, 金德才, 邓晔. 环境微生物宏基因组学研究中的生物信息学方法. 微生物学通报[J]. 2015, 42(5): 890-901, http://ir.rcees.ac.cn/handle/311016/33366.[142] 邓晔. 三峡大坝对微生物群落和潜在功能的影响. Scientific Reports. 2015, [143] 邓晔. 功能微生物群落在乙醇类燃料泄漏过程中的演变. Environmental Pollution. 2015, [144] Yang, Bo, Kong, Xiao, Cui, Bingjian, Jin, Decai, Deng, Ye, Zhuang, Xuliang, Zhuang, Guoqiang, Bai, Zhihui. Impact of Rural Domestic Wastewater Irrigation on the Physicochemical and Microbiological Properties of Pakchoi and Soil. WATER[J]. 2015, 7(5): 1825-1839, http://ir.rcees.ac.cn/handle/311016/32931.[145] Xiong, Jinbo, He, Zhili, Shi, Shengjing, Kent, Angela, Deng, Ye, Wu, Liyou, Van Nostrand, Joy D, Zhou, Jizhong. Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C-4 agroecosystem. SCIENTIFIC REPORTS[J]. 2015, 5: http://ir.rcees.ac.cn/handle/311016/32926.[146] Tu, Qichao, Yuan, Mengting, He, Zhili, Deng, Ye, Xue, Kai, Wu, Liyou, Hobbie, Sarah E, Reich, Peter B, Zhou, Jizhong. Fungal Communities Respond to Long-Term CO2 Elevation by Community Reassembly. APPLIED AND ENVIRONMENTAL MICROBIOLOGY[J]. 2015, 81(7): 2445-2454, https://www.webofscience.com/wos/woscc/full-record/WOS:000351842000019.[147] 邓晔. 真菌群落对长期二氧化碳升高的反应. Applied and environmental microbiology. 2015, [148] Ma, Jie, Deng, Ye, Yuan, Tong, Zhou, Jizhong, Alvarez, Pedro J J. Succession of microbial functional communities in response to a pilot-scale ethanol-blended fuel release throughout the plume life cycle. ENVIRONMENTAL POLLUTION[J]. 2015, 198: 154-160, http://dx.doi.org/10.1016/j.envpol.2015.01.005.[149] Hemme, Christopher L, Tu, Qichao, Shi, Zhou, Qin, Yujia, Gao, Weimin, Deng, Ye, Van Nostrand, Joy D, Wu, Liyou, He, Zhili, Chain, Patrick S G, Tringe, Susannah G, Fields, Matthew W, Rubin, Edward M, Tiedje, James M, Hazen, Terry C, Arkin, Adam P, Zhou, Jizhong. Comparative metagenomics reveals impact of contaminants on groundwater microbiomes. FRONTIERS IN MICROBIOLOGY[J]. 2015, 6: https://doaj.org/article/1b2c605b760c4f3ea36301c3a218336b.[150] Jizhong Zhou, Zhili He, Yunfeng Yang, Ye Deng, Susannah G Tringe, Lisa AlvarezCohen. High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats. MBIO[J]. 2015, 6(1): http://dx.doi.org/10.1128/mBio.02288-14.[151] Liang, Yuting, Jiang, Yuji, Wang, Feng, Wen, Chongqing, Deng, Ye, Xue, Kai, Qin, Yujia, Yang, Yunfeng, Wu, Liyou, Zhou, Jizhong, Sun, Bo. Long-term soil transplant simulating climate change with latitude significantly alters microbial temporal turnover. ISME JOURNAL[J]. 2015, 9(12): 2561-2572, http://dx.doi.org/10.1038/ismej.2015.78.[152] 邓晔. 使用宏基因组和网络分析揭示土壤微生物在森林林线附近的分布. Scientific Reports. 2015, [153] Ding, Junjun, Zhang, Yuguang, Deng, Ye, Cong, Jing, Lu, Hui, Sun, Xin, Yang, Caiyun, Yuan, Tong, Van Nostrand, Joy D, Li, Diqiang, Zhou, Jizhong, Yang, Yunfeng. Integrated metagenomics and network analysis of soil microbial community of the forest timberline. SCIENTIFIC REPORTS[J]. 2015, 5: http://ir.rcees.ac.cn/handle/311016/32795.[154] Zhang, Ping, Van Nostrand, Joy D, He, Zhili, Chakraborty, Romy, Deng, Ye, Curtis, Daniel, Fields, Matthew W, Hazen, Terry C, Arkin, Adam P, Zhou, Jizhong. A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction. ENVIRONMENTAL SCIENCE & TECHNOLOGY[J]. 2015, 49(21): 12922-12931, http://ir.rcees.ac.cn/handle/311016/32909.[155] Wang, Xiaobo, Van Nostrand, Joy D, Deng, Ye, Lu, Xiaotao, Wang, Chao, Zhou, Jizhong, Han, Xingguo. Scale-dependent effects of climate and geographic distance on bacterial diversity patterns across northern China's grasslands. FEMS MICROBIOLOGY ECOLOGY[J]. 2015, 91(12): http://dx.doi.org/10.1093/femsec/fiv133.[156] 邓晔. 高通量宏基因组技术用于微生物群落分析：开放和封闭体系. mBio. 2015, [157] Wu, Liyou, Wen, Chongqing, Qin, Yujia, Yin, Huaqun, Tu, Qichao, Van Nostrand, Joy D, Yuan, Tong, Yuan, Menting, Deng, Ye, Zhou, Jizhong. Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis. BMC MICROBIOLOGY[J]. 2015, 15(1): http://dx.doi.org/10.1186/s12866-015-0450-4.[158] 孔晓, 崔丙健, 金德才, 吴尚华, 杨波, 邓晔, 庄国强, 庄绪亮. 农村污水膜生物反应器系统中微生物群落解析. 环境科学[J]. 2015, 36(9): 3329-3338, http://ir.rcees.ac.cn/handle/311016/33377.[159] Jin, Decai, Kong, Xiao, Li, Yujie, Bai, Zhihui, Zhuang, Guoqiang, Zhuang, Xuliang, Deng, Ye. Biodegradation of di-n-Butyl Phthalate by Achromobacter sp Isolated from Rural Domestic Wastewater. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH[J]. 2015, 12(10): 13510-13522, http://ir.rcees.ac.cn/handle/311016/32913.[160] Zhang, Yuguang, Cong, Jing, Lu, Hui, Li, Guangliang, Xue, Yadong, Deng, Ye, Li, Hui, Zhou, Jizhong, Li, Diqiang. Soil bacterial diversity patterns and drivers along an elevational gradient on Shennongjia Mountain, China. MICROBIAL BIOTECHNOLOGY[J]. 2015, 8(4): 739-746, http://ir.rcees.ac.cn/handle/311016/32377.[161] Yan, Qingyun, Bi, Yonghong, Deng, Ye, He, Zhili, Wu, Liyou, Van Nostrand, Joy D, Shi, Zhou, Li, Jinjin, Wang, Xi, Hu, Zhengyu, Yu, Yuhe, Zhou, Jizhong. Impacts of the Three Gorges Dam on microbial structure and potential function. SCIENTIFIC REPORTS[J]. 2015, 5: http://dx.doi.org/10.1038/srep08605.[162] 邓晔. GeoChip4用于分析微生物群落的功能基因芯片. Molecular Ecology Resources. 2014, [163] 邓晔. 随机性因素对水生生态系统的连续影响. Proceedings of the National Academy of Sciences of the United States of America. 2014, [164] 邓晔. 土壤微生物在大豆农业生态系统中对二氧化碳和臭氧升高的直接反应. The ISME Journal. 2014, [165] Jiang, Hongchen, Huang, Liuqin, Deng, Ye, Wang, Shang, Zhou, Yu, Liu, Li, Dong, Hailiang. Latitudinal Distribution of Ammonia-Oxidizing Bacteria and Archaea in the Agricultural Soils of Eastern China. APPLIED AND ENVIRONMENTAL MICROBIOLOGY[J]. 2014, 80(18): 5593-5602, https://www.webofscience.com/wos/woscc/full-record/WOS:000341488200005.[166] 邓晔. 中国东部农田氨氧化细菌和古菌的纬度分布特征. Applied and environmental microbiology. 2014, [167] Zhou, Jizhong, Deng, Ye, Zhang, Ping, Xue, Kai, Liang, Yuting, Van Nostrand, Joy D, Yang, Yunfeng, He, Zhili, Wu, Liyou, Stahl, David A, Hazen, Terry C, Tiedje, James M, Arkin, Adam P. Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2014, 111(9): E836-E845, http://www.irgrid.ac.cn/handle/1471x/936359.[168] 邓晔. 开发HuMiChip检测人体微生物群落的功能特征. PloS One. 2014, [169] 邓晔. StressChip作为检测环境逆境中微生物群落反应的工具. Environmental Science and Technology. 2013, [170] 邓晔. 菌株或者菌种特异探针设计. Appl. Environ. Microbiol. 2013, [171] 邓晔. 深海原油泄漏引起微生物功能基因富集. The ISME Journal. 2012, [172] 邓晔. 臭氧升高改变了小麦根际周边微生物群落的功能基因表型. The ISME Journal. 2012, [173] 邓晔. 二氧化碳升高引起土壤微生物群落结构变化. Appl. Environ. Microbiol. 2012, [174] 邓晔. 微生物介导的全球升温中碳循环的反馈效应. Nature Climate Change. 2012, [175] Jin, Qingchao, Chen, Baoshan, Li, Youzhi, Peng, Youliang, Deng, Ye, Dai, ChengEn, Luo, Hongmei, Zhao, Dong, Chen, Jack, Li, Debao, Dong, Haitao. Expression Profile During the Development of Appressoria Induced by Hydrophobic Surfaces in Magnaporthe grisea Y34. JOURNAL OF PHYTOPATHOLOGY[J]. 2010, 158(3): 143-153, https://www.webofscience.com/wos/woscc/full-record/WOS:000274201100002.[176] Shang, Jinjie, Wu, Xiaosong, Lan, Xiuwan, Fan, Yunyan, Dong, Haitao, Deng, Ye, Nuss, Donald L, Chen, Baoshan. Large-scale expressed sequence tap analysis for the chestnut blight fungus Cryphonectria parasitica. FUNGAL GENETICS AND BIOLOGY[J]. 2008, 45(3): 319-327, https://www.webofscience.com/wos/woscc/full-record/WOS:000253305400015.[177] Dong, Haitao, Deng, Ye, Chen, Jack, Wang, Sheng, Peng, Sihua, Dai, Chengen, Fang, Yongqi, Shao, Jing, Lou, Yichun, Li, Debao. An exploration of 3 '-end processing signals and their tissue distribution in Oryza sativa. GENE[J]. 2007, 389(2): 107-113, http://dx.doi.org/10.1016/j.gene.2006.10.015.[178] 金庆超, 董海涛, 陈保善, 邓晔, 戴承恩, 方永启, 邵菁, 娄沂春, 李有志, 李德葆, 彭友良. 稻瘟病菌发育cDNA文库构建与表达序列标签分析. 农业生物技术学报[J]. 2006, 14(6): 963-969, [179] 张海燕, 董海涛, 姚海根, 向跃武, 谭学林, 方永启, 邓晔, 金庆超, Cabezas DANIEL, 姜玉新, 戴承恩, 阎文昭, 李德葆. 冻融法纯化水稻胚乳RNA及稻米品质重要相关基因表达谱研究. 中国水稻科学[J]. 2005, 19(2): 105-110, http://lib.cqvip.com/Qikan/Article/Detail?id=15161897.[180] 郭小勤, 董海涛, 郑康乐, 骆红梅, 谭学林, 方永启, 王炎钦, 邓晔, 戴承恩, 娄沂春, 邵菁, 史文琴, 赵东, 李德葆. 水稻光温敏核不育系培矮64S在不同光周期／温度下表达谱的变化. 科学通报[J]. 2005, 50(22): 2509-2513, http://lib.cqvip.com/Qikan/Article/Detail?id=20752603.[181] 王丽华, 邓晔, 方永启, 谭学林, 李德葆. 水稻花期特异表达基因的cDNA和RNA阵列检测. 中国水稻科学[J]. 2004, 18(3): 192-198, http://lib.cqvip.com/Qikan/Article/Detail?id=9596080.[182] Xiao Kong, Decai Jin, Shulan Jin, Zhigang Wang, Huaqun Yin, Meiying Xu, Ye Deng. Responses of bacterial community to dibutyl phthalate (DBP) pollution in a soil-vegetable ecosystem. Journal of Hazardous Materials. http://dx.doi.org/10.1016/j.jhazmat.2018.04.015.[183] []. 分子生态网络分析研究进展. http://159.226.73.51/handle/332005/15646.
发表著作
（ 1 ） 分子生态网络分析, Molecular ecological network analysis, Springer, 2014-06, 第 1 作者（ 2 ） 生物芯片数据分析, Microarray data analysis, Horizon Scientific Press, 2014-06, 第 1 作者
科研活动
科研项目
（ 1 ） 生产过程中抗生素与抗药基因的排放特征、环境行为及控制技术, 参与, 国家级, 2015-01--2019-12（ 2 ） 典型森林土壤微生物空间格局及驱动机制, 参与, 部委级, 2014-01--2018-12（ 3 ） 东江高度集约开发区域水质风险控制与水生态功能恢复技术集成及综合示范, 参与, 国家级, 2015-01--2017-12（ 4 ） 长江流域自然保护区内土壤微生物群落的种-面积关系变化与驱动机制, 主持, 国家级, 2016-01--2016-12（ 5 ） 污染环境中功能微生物类群的快速识别和原位调控, 主持, 部委级, 2016-09--2020-12（ 6 ） 北方农牧交错带草地退化形成机理与驱动机制, 参与, 国家级, 2016-07--2020-12
参与会议
（1）微生物群落网络分析在重金属铀污染环境中研究 美国微生物学会2013年度大会 Ye Deng 2013-06-22（2）微生物群落网络分析 美国微生物学会2011年度大会 Ye Deng 2011-06-22
合作情况
Dr. Jizhong Zhou (University of Oklahoma)
Dr. James M. Tiedje (Michigan State University)
Dr. James Hemphill Brown (Univ of New Mexico)
Dr. Joan B. Rose (Michigan State University)
Dr. Terry C. Hazen (LBL, University of Tennessee)
Dr. Rob Knight (University of Colorado)
Dr. Nianzhi Jiao (Xiamen Univ)
指导学生
现指导学生魏子艳 01 19368 刘洋荧 02 67011 孔晓 01 19367 王朱珺 01 19367 吴悦妮 01 19367 杜雄峰 02 67011 秦化宇 01 67674 冯凯 01 67674
2013 中国科学院大学，网络信息中心.